Class GillespieProbability

• Defined in File GillespieCalculator.h

Class Documentation

class GillespieProbability

Public Functions

GillespieProbability()

GillespieProbability(const MapLocation &c)

void setDispersalOutsideCellProbability(const double &d)

void setCoalescenceProbability(const double &c)

void setSpeciationProbability(const double &s)

void setRandomNumber(const double &r)

double getInCellProbability() const

CellEventType generateRandomEvent(const shared_ptr<RNGController> &rng) const

MapLocation &getMapLocation()

const MapLocation &getMapLocation() const

double getLambda(const double &local_death_rate, const double &summed_death_rate, const unsigned long &n) const

Gets the parameter for the exponential function.

The rate is per birth-death event on the whole landscape.

Return

lambda

Parameters

• summed_death_rate:
• n:
• total_n:

double calcTimeToNextEvent(const double &local_death_rate, const double &mean_death_rate, const unsigned long &n) const

void reset()

Protected Attributes

double dispersal_outside_cell_probability

double coalescence_probability

double speciation_probability

double random_number

MapLocation location

Friends

ostream &operator<<(ostream &os, const GillespieProbability &gp)

std::istream &operator>>(std::istream &is, GillespieProbability &gp)